J7_9D0G_003

3D structure

PDB id

9D0G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with O-cresomycin, mRNA, deacylated A-site tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.50A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

CGAAAU*AG*UGAG*CGAGCGC*GAGAC*GG*CGGUAG

Length

32 nucleotides

Bulged bases

9D0G|1|2A|A|945, 9D0G|1|2A|C|975

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9D0G|1|2A|C|817
9D0G|1|2A|G|818
9D0G|1|2A|A|819
9D0G|1|2A|A|820
9D0G|1|2A|A|821
9D0G|1|2A|U|822
*
9D0G|1|2A|A|835
9D0G|1|2A|G|836
*
9D0G|1|2A|U|943
9D0G|1|2A|G|944
9D0G|1|2A|A|945
9D0G|1|2A|G|946
*
9D0G|1|2A|C|971
9D0G|1|2A|G|972
9D0G|1|2A|A|973
9D0G|1|2A|G|974
9D0G|1|2A|C|975
9D0G|1|2A|G|975|||A
9D0G|1|2A|C|976
*
9D0G|1|2A|G|987
9D0G|1|2A|A|988
9D0G|1|2A|G|989
9D0G|1|2A|A|990
9D0G|1|2A|C|991
*
9D0G|1|2A|G|1163
9D0G|1|2A|G|1164
*
9D0G|1|2A|C|1185
9D0G|1|2A|G|1186
9D0G|1|2A|G|1187
9D0G|1|2A|U|1188
9D0G|1|2A|A|1189
9D0G|1|2A|G|1190

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 23

50S ribosomal protein L30

Chain 28

50S ribosomal protein L35

Chain 2B

5S ribosomal RNA; 5S rRNA

Chain 2P

50S ribosomal protein L15

Chain 2U

50S ribosomal protein L20

Chain 2V

50S ribosomal protein L21