J7_9D7T_001

3D structure

PDB id

9D7T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with Api137 antimicrobial peptide, mRNA, A-site release factor 1, and deacylated P-site and E-site tRNAphe at 2.70A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

AUGGUAAG*UACAAGC*GAACUG*CUAC*GCGCAG*CC*GU

Length

35 nucleotides

Bulged bases

9D7T|1|1A|G|530, 9D7T|1|1A|C|2021

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9D7T|1|1A|A|8
9D7T|1|1A|U|9
9D7T|1|1A|G|10
9D7T|1|1A|G|11
9D7T|1|1A|U|12
9D7T|1|1A|A|13
9D7T|1|1A|A|14
9D7T|1|1A|G|15
*
9D7T|1|1A|U|525
9D7T|1|1A|A|526
9D7T|1|1A|C|527
9D7T|1|1A|A|528
9D7T|1|1A|A|529
9D7T|1|1A|G|530
9D7T|1|1A|C|531
*
9D7T|1|1A|G|2018
9D7T|1|1A|A|2019
9D7T|1|1A|A|2020
9D7T|1|1A|C|2021
9D7T|1|1A|U|2022
9D7T|1|1A|G|2023
*
9D7T|1|1A|C|2040
9D7T|1|1A|U|2041
9D7T|1|1A|A|2042
9D7T|1|1A|C|2043
*
9D7T|1|1A|G|2625
9D7T|1|1A|C|2626
9D7T|1|1A|G|2627
9D7T|1|1A|C|2628
9D7T|1|1A|A|2629
9D7T|1|1A|G|2630
*
9D7T|1|1A|C|2788
9D7T|1|1A|C|2789
*
9D7T|1|1A|G|2894
9D7T|1|1A|U|2895

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 15

50S ribosomal protein L32

Chain 1E

50S ribosomal protein L3

Chain 1N

50S ribosomal protein L13

Chain 1U

50S ribosomal protein L20

Chain 1W

50S ribosomal protein L22