J7_9D7T_002

3D structure

PDB id

9D7T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with Api137 antimicrobial peptide, mRNA, A-site release factor 1, and deacylated P-site and E-site tRNAphe at 2.70A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

CGAAAU*AG*UGAG*CGAGCGC*GAGAC*GG*CGGUAG

Length

32 nucleotides

Bulged bases

9D7T|1|1A|A|945, 9D7T|1|1A|C|975

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9D7T|1|1A|C|817
9D7T|1|1A|G|818
9D7T|1|1A|A|819
9D7T|1|1A|A|820
9D7T|1|1A|A|821
9D7T|1|1A|U|822
*
9D7T|1|1A|A|835
9D7T|1|1A|G|836
*
9D7T|1|1A|U|943
9D7T|1|1A|G|944
9D7T|1|1A|A|945
9D7T|1|1A|G|946
*
9D7T|1|1A|C|971
9D7T|1|1A|G|972
9D7T|1|1A|A|973
9D7T|1|1A|G|974
9D7T|1|1A|C|975
9D7T|1|1A|G|975|||A
9D7T|1|1A|C|976
*
9D7T|1|1A|G|987
9D7T|1|1A|A|988
9D7T|1|1A|G|989
9D7T|1|1A|A|990
9D7T|1|1A|C|991
*
9D7T|1|1A|G|1163
9D7T|1|1A|G|1164
*
9D7T|1|1A|C|1185
9D7T|1|1A|G|1186
9D7T|1|1A|G|1187
9D7T|1|1A|U|1188
9D7T|1|1A|A|1189
9D7T|1|1A|G|1190

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 13

50S ribosomal protein L30

Chain 18

50S ribosomal protein L35

Chain 1B

5S ribosomal RNA; 5S rRNA

Chain 1P

50S ribosomal protein L15

Chain 1U

50S ribosomal protein L20

Chain 1V

50S ribosomal protein L21