Loop J7_9DFC

3D structure

PDB id: 9DFC (explore in PDB, NAKB, or RNA 3D Hub)
Description: Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with lasso peptide lariocidin, mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.50A resolution
Experimental method: X-RAY DIFFRACTION
Resolution: 2.5 Å

Loop

Sequence: AUGGUAAG*UACAAGC*GAACUG*CUAC*GCGCAG*CC*GU
Length: 35 nucleotides
Bulged bases: 9DFC|1|1A|G|530, 9DFC|1|1A|C|2021
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

9DFC|1|1A|A|8
9DFC|1|1A|U|9
9DFC|1|1A|G|10
9DFC|1|1A|G|11
9DFC|1|1A|U|12
9DFC|1|1A|A|13
9DFC|1|1A|A|14
9DFC|1|1A|G|15
*
9DFC|1|1A|U|525
9DFC|1|1A|A|526
9DFC|1|1A|C|527
9DFC|1|1A|A|528
9DFC|1|1A|A|529
9DFC|1|1A|G|530
9DFC|1|1A|C|531
*
9DFC|1|1A|G|2018
9DFC|1|1A|A|2019
9DFC|1|1A|A|2020
9DFC|1|1A|C|2021
9DFC|1|1A|U|2022
9DFC|1|1A|G|2023
*
9DFC|1|1A|C|2040
9DFC|1|1A|U|2041
9DFC|1|1A|A|2042
9DFC|1|1A|C|2043
*
9DFC|1|1A|G|2625
9DFC|1|1A|C|2626
9DFC|1|1A|G|2627
9DFC|1|1A|C|2628
9DFC|1|1A|A|2629
9DFC|1|1A|G|2630
*
9DFC|1|1A|C|2788
9DFC|1|1A|C|2789
*
9DFC|1|1A|G|2894
9DFC|1|1A|U|2895

Current chains

Chain 1A: 23S Ribosomal RNA

Nearby chains

Chain 15: 50S ribosomal protein L32
Chain 1E: 50S ribosomal protein L3
Chain 1N: 50S ribosomal protein L13
Chain 1U: 50S ribosomal protein L20
Chain 1W: 50S ribosomal protein L22

J7_9DFC_001