3D structure

PDB id
9DFC (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with lasso peptide lariocidin, mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.50A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.5 Å

Loop

Sequence
CGAAAU*AG*UGAG*CGAGCGC*GAGAC*GG*CGGUAG
Length
32 nucleotides
Bulged bases
9DFC|1|2A|A|945, 9DFC|1|2A|C|975
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

9DFC|1|2A|C|817
9DFC|1|2A|G|818
9DFC|1|2A|A|819
9DFC|1|2A|A|820
9DFC|1|2A|A|821
9DFC|1|2A|U|822
*
9DFC|1|2A|A|835
9DFC|1|2A|G|836
*
9DFC|1|2A|U|943
9DFC|1|2A|G|944
9DFC|1|2A|A|945
9DFC|1|2A|G|946
*
9DFC|1|2A|C|971
9DFC|1|2A|G|972
9DFC|1|2A|A|973
9DFC|1|2A|G|974
9DFC|1|2A|C|975
9DFC|1|2A|G|975|||A
9DFC|1|2A|C|976
*
9DFC|1|2A|G|987
9DFC|1|2A|A|988
9DFC|1|2A|G|989
9DFC|1|2A|A|990
9DFC|1|2A|C|991
*
9DFC|1|2A|G|1163
9DFC|1|2A|G|1164
*
9DFC|1|2A|C|1185
9DFC|1|2A|G|1186
9DFC|1|2A|G|1187
9DFC|1|2A|U|1188
9DFC|1|2A|A|1189
9DFC|1|2A|G|1190

Current chains

Chain 2A
23S Ribosomal RNA

Nearby chains

Chain 23
50S ribosomal protein L30
Chain 28
50S ribosomal protein L35
Chain 2B
5S ribosomal RNA; 5S rRNA
Chain 2P
50S ribosomal protein L15
Chain 2U
50S ribosomal protein L20
Chain 2V
50S ribosomal protein L21

Coloring options:

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