J7_9DFD_003
3D structure
- PDB id
- 9DFD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with lasso peptide lariocidin B, mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.60A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.6 Å
Loop
- Sequence
- CGAAAU*AG*UGAG*CGAGCGC*GAGAC*GG*CGGUAG
- Length
- 32 nucleotides
- Bulged bases
- 9DFD|1|2A|A|945, 9DFD|1|2A|C|975
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9DFD|1|2A|C|817
9DFD|1|2A|G|818
9DFD|1|2A|A|819
9DFD|1|2A|A|820
9DFD|1|2A|A|821
9DFD|1|2A|U|822
*
9DFD|1|2A|A|835
9DFD|1|2A|G|836
*
9DFD|1|2A|U|943
9DFD|1|2A|G|944
9DFD|1|2A|A|945
9DFD|1|2A|G|946
*
9DFD|1|2A|C|971
9DFD|1|2A|G|972
9DFD|1|2A|A|973
9DFD|1|2A|G|974
9DFD|1|2A|C|975
9DFD|1|2A|G|975|||A
9DFD|1|2A|C|976
*
9DFD|1|2A|G|987
9DFD|1|2A|A|988
9DFD|1|2A|G|989
9DFD|1|2A|A|990
9DFD|1|2A|C|991
*
9DFD|1|2A|G|1163
9DFD|1|2A|G|1164
*
9DFD|1|2A|C|1185
9DFD|1|2A|G|1186
9DFD|1|2A|G|1187
9DFD|1|2A|U|1188
9DFD|1|2A|A|1189
9DFD|1|2A|G|1190
Current chains
- Chain 2A
- 23S Ribosomal RNA
Nearby chains
- Chain 23
- 50S ribosomal protein L30
- Chain 28
- 50S ribosomal protein L35
- Chain 2B
- 5S ribosomal RNA; 5S rRNA
- Chain 2P
- 50S ribosomal protein L15
- Chain 2U
- 50S ribosomal protein L20
- Chain 2V
- 50S ribosomal protein L21
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