J7_9DP7_001
3D structure
- PDB id
- 9DP7 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) and hygromycin B, Class II
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.38 Å
Loop
- Sequence
- CGAAGUUU*AUAG*UGGG*CGAUGC*GAACG*CC*GAGUAG
- Length
- 35 nucleotides
- Bulged bases
- 9DP7|1|A1|G|1116
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9DP7|1|A1|C|949
9DP7|1|A1|G|950
9DP7|1|A1|A|951
9DP7|1|A1|A|952
9DP7|1|A1|G|953
9DP7|1|A1|U|954
9DP7|1|A1|U|955
9DP7|1|A1|U|956
*
9DP7|1|A1|A|965
9DP7|1|A1|U|966
9DP7|1|A1|A|967
9DP7|1|A1|G|968
*
9DP7|1|A1|U|1114
9DP7|1|A1|G|1115
9DP7|1|A1|G|1116
9DP7|1|A1|G|1117
*
9DP7|1|A1|C|1141
9DP7|1|A1|G|1142
9DP7|1|A1|A|1143
9DP7|1|A1|U|1144
9DP7|1|A1|G|1145
9DP7|1|A1|C|1146
*
9DP7|1|A1|G|1157
9DP7|1|A1|A|1158
9DP7|1|A1|A|1159
9DP7|1|A1|C|1160
9DP7|1|A1|G|1161
*
9DP7|1|A1|C|1338
9DP7|1|A1|C|1339
*
9DP7|1|A1|G|1365
9DP7|1|A1|A|1366
9DP7|1|A1|G|1367
9DP7|1|A1|U|1368
9DP7|1|A1|A|1369
9DP7|1|A1|G|1370
Current chains
- Chain A1
- 25S rRNA
Nearby chains
- Chain A3
- 5S ribosomal RNA; 5S rRNA
- Chain AC
- Large ribosomal subunit protein uL4A
- Chain AF
- 60S ribosomal protein L7-A
- Chain AL
- 60S ribosomal protein L13-A
- Chain AQ
- 60S ribosomal protein L18-A
- Chain AT
- 60S ribosomal protein L21-A
- Chain Aa
- 60S ribosomal protein L28
- Chain Ab
- Large ribosomal subunit protein eL29
- Chain Ae
- Large ribosomal subunit protein eL32
- Chain Af
- 60S ribosomal protein L33-A
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