J7_9EC3_001

3D structure

PDB id

9EC3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the ribosome-tunnel occluding hibernation factor bound to the Mycobacterium tuberculosis C- 70S ribosome carrying fMet-tRNA(fMet) and deacylated tRNA at ribosome P and E sites.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.29 Å

Loop

Sequence

CCGAAAU*AG*UGAG*CGAAAG*CAGAU*GC*GGGUAGG

Length

33 nucleotides

Bulged bases

9EC3|1|I|A|1073

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9EC3|1|I|C|945
9EC3|1|I|C|946
9EC3|1|I|G|947
9EC3|1|I|A|948
9EC3|1|I|A|949
9EC3|1|I|A|950
9EC3|1|I|U|951
*
9EC3|1|I|A|964
9EC3|1|I|G|965
*
9EC3|1|I|U|1071
9EC3|1|I|G|1072
9EC3|1|I|A|1073
9EC3|1|I|G|1074
*
9EC3|1|I|C|1100
9EC3|1|I|G|1101
9EC3|1|I|A|1102
9EC3|1|I|A|1103
9EC3|1|I|A|1104
9EC3|1|I|G|1105
*
9EC3|1|I|C|1116
9EC3|1|I|A|1117
9EC3|1|I|G|1118
9EC3|1|I|A|1119
9EC3|1|I|U|1120
*
9EC3|1|I|G|1293
9EC3|1|I|C|1294
*
9EC3|1|I|G|1317
9EC3|1|I|G|1318
9EC3|1|I|G|1319
9EC3|1|I|U|1320
9EC3|1|I|A|1321
9EC3|1|I|G|1322
9EC3|1|I|G|1323

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain 3

50S ribosomal protein L35

Chain B

5S ribosomal RNA; 5S rRNA

Chain L

50S ribosomal protein L15

Chain Q

50S ribosomal protein L20

Chain R

Large ribosomal subunit protein bL21

Chain Z

50S ribosomal protein L30