J7_9EHO_001
3D structure
- PDB id
- 9EHO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Octopus ribosome, hybrid 80S
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CGAAGU*AG*UGGG*UGAUGU*GAACG*CC*GAGUAG
- Length
- 31 nucleotides
- Bulged bases
- 9EHO|1|5|G|1757
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9EHO|1|5|C|1519
9EHO|1|5|G|1520
9EHO|1|5|A|1521
9EHO|1|5|A|1522
9EHO|1|5|G|1523
9EHO|1|5|U|1524
*
9EHO|1|5|A|1537
9EHO|1|5|G|1538
*
9EHO|1|5|U|1755
9EHO|1|5|G|1756
9EHO|1|5|G|1757
9EHO|1|5|G|1758
*
9EHO|1|5|U|1782
9EHO|1|5|G|1783
9EHO|1|5|A|1784
9EHO|1|5|U|1785
9EHO|1|5|G|1786
9EHO|1|5|U|1787
*
9EHO|1|5|G|1798
9EHO|1|5|A|1799
9EHO|1|5|A|1800
9EHO|1|5|C|1801
9EHO|1|5|G|1802
*
9EHO|1|5|C|1979
9EHO|1|5|C|1980
*
9EHO|1|5|G|2035
9EHO|1|5|A|2036
9EHO|1|5|G|2037
9EHO|1|5|U|2038
9EHO|1|5|A|2039
9EHO|1|5|G|2040
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain 7
- 5S ribosomal RNA; 5S rRNA
- Chain F
- 60S ribosomal protein L7 isoform X1
- Chain L
- Large ribosomal subunit protein eL13
- Chain Q
- Large ribosomal subunit protein uL15/eL18 domain-containing protein
- Chain T
- 60S ribosomal protein L21
- Chain a
- Large ribosomal subunit protein uL15
- Chain b
- 60S ribosomal protein L29
- Chain e
- 60S ribosomal protein L32
- Chain f
- Large ribosomal subunit protein eL33
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