J7_9GGR_001

3D structure

PDB id

9GGR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HrpA-bound E. coli disome, Class II

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGACUAAG*UACAAGC*GAACUC*GUAC*GCGCUG*CC*GG

Length

35 nucleotides

Bulged bases

9GGR|1|AV|U|12, 9GGR|1|AV|C|2021

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9GGR|1|AV|C|8
9GGR|1|AV|G|9
9GGR|1|AV|A|10
9GGR|1|AV|C|11
9GGR|1|AV|U|12
9GGR|1|AV|A|13
9GGR|1|AV|A|14
9GGR|1|AV|G|15
*
9GGR|1|AV|U|525
9GGR|1|AV|A|526
9GGR|1|AV|C|527
9GGR|1|AV|A|528
9GGR|1|AV|A|529
9GGR|1|AV|G|530
9GGR|1|AV|C|531
*
9GGR|1|AV|G|2018
9GGR|1|AV|A|2019
9GGR|1|AV|A|2020
9GGR|1|AV|C|2021
9GGR|1|AV|U|2022
9GGR|1|AV|C|2023
*
9GGR|1|AV|G|2040
9GGR|1|AV|U|2041
9GGR|1|AV|A|2042
9GGR|1|AV|C|2043
*
9GGR|1|AV|G|2625
9GGR|1|AV|C|2626
9GGR|1|AV|G|2627
9GGR|1|AV|C|2628
9GGR|1|AV|U|2629
9GGR|1|AV|G|2630
*
9GGR|1|AV|C|2788
9GGR|1|AV|C|2789
*
9GGR|1|AV|G|2894
9GGR|1|AV|G|2895

Current chains

Chain AV

23S ribosomal RNA

Nearby chains

Chain AY

50S ribosomal protein L3

Chain Ae

Large ribosomal subunit protein uL13

Chain Al

Large ribosomal subunit protein bL20

Chain An

Large ribosomal subunit protein uL22

Chain Av

Large ribosomal subunit protein bL32