J7_9GHE_001

3D structure

PDB id

9GHE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus FusB bound to the small subunit of the Escherichia coli 70S ribosome (FusB-70S:SSU)

Experimental method

ELECTRON MICROSCOPY

Resolution

1.87 Å

Loop

Sequence

CGACUAAG*UACAAGC*GAACUC*GUAC*GCGCUG*CC*GG

Length

35 nucleotides

Bulged bases

9GHE|1|a|C|2021

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9GHE|1|a|C|8
9GHE|1|a|G|9
9GHE|1|a|A|10
9GHE|1|a|C|11
9GHE|1|a|U|12
9GHE|1|a|A|13
9GHE|1|a|A|14
9GHE|1|a|G|15
*
9GHE|1|a|U|525
9GHE|1|a|A|526
9GHE|1|a|C|527
9GHE|1|a|A|528
9GHE|1|a|A|529
9GHE|1|a|G|530
9GHE|1|a|C|531
*
9GHE|1|a|G|2018
9GHE|1|a|A|2019
9GHE|1|a|A|2020
9GHE|1|a|C|2021
9GHE|1|a|U|2022
9GHE|1|a|C|2023
*
9GHE|1|a|G|2040
9GHE|1|a|U|2041
9GHE|1|a|A|2042
9GHE|1|a|C|2043
*
9GHE|1|a|G|2625
9GHE|1|a|C|2626
9GHE|1|a|G|2627
9GHE|1|a|C|2628
9GHE|1|a|U|2629
9GHE|1|a|G|2630
*
9GHE|1|a|C|2788
9GHE|1|a|C|2789
*
9GHE|1|a|G|2894
9GHE|1|a|G|2895

Current chains

Chain a

23S rRNA

Nearby chains

Chain d

50S ribosomal protein L3

Chain i

50S ribosomal protein L13

Chain p

50S ribosomal protein L20

Chain r

50S ribosomal protein L22

Chain z

50S ribosomal protein L32