3D structure

PDB id
9GHF (explore in PDB, NAKB, or RNA 3D Hub)
Description
Staphylococcus aureus FusB bound to the large subunit of the Escherichia coli 70S ribosome (FusB-70S:LSU)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.4 Å

Loop

Sequence
CGACUAAG*UACAAGC*GAACUC*GUAC*GCGCUG*CC*GG
Length
35 nucleotides
Bulged bases
9GHF|1|a|C|2021
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

9GHF|1|a|C|8
9GHF|1|a|G|9
9GHF|1|a|A|10
9GHF|1|a|C|11
9GHF|1|a|U|12
9GHF|1|a|A|13
9GHF|1|a|A|14
9GHF|1|a|G|15
*
9GHF|1|a|U|525
9GHF|1|a|A|526
9GHF|1|a|C|527
9GHF|1|a|A|528
9GHF|1|a|A|529
9GHF|1|a|G|530
9GHF|1|a|C|531
*
9GHF|1|a|G|2018
9GHF|1|a|A|2019
9GHF|1|a|A|2020
9GHF|1|a|C|2021
9GHF|1|a|U|2022
9GHF|1|a|C|2023
*
9GHF|1|a|G|2040
9GHF|1|a|U|2041
9GHF|1|a|A|2042
9GHF|1|a|C|2043
*
9GHF|1|a|G|2625
9GHF|1|a|C|2626
9GHF|1|a|G|2627
9GHF|1|a|C|2628
9GHF|1|a|U|2629
9GHF|1|a|G|2630
*
9GHF|1|a|C|2788
9GHF|1|a|C|2789
*
9GHF|1|a|G|2894
9GHF|1|a|G|2895

Current chains

Chain a
23S rRNA

Nearby chains

Chain d
50S ribosomal protein L3
Chain i
50S ribosomal protein L13
Chain p
50S ribosomal protein L20
Chain r
50S ribosomal protein L22
Chain z
50S ribosomal protein L32

Coloring options:

Copyright 2025 BGSU RNA group. Page generated in 0.2116 s