3D structure

PDB id
9GHF (explore in PDB, NAKB, or RNA 3D Hub)
Description
Staphylococcus aureus FusB bound to the large subunit of the Escherichia coli 70S ribosome (FusB-70S:LSU)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.4 Å

Loop

Sequence
CGAAAG*CGCC*GAGACAC*GAAGAG*CAGAC*GC*GGGUAG
Length
36 nucleotides
Bulged bases
9GHF|1|a|A|945
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

9GHF|1|a|C|817
9GHF|1|a|G|818
9GHF|1|a|A|819
9GHF|1|a|A|820
9GHF|1|a|A|821
9GHF|1|a|G|822
*
9GHF|1|a|C|835
9GHF|1|a|G|836
9GHF|1|a|C|837
9GHF|1|a|C|838
*
9GHF|1|a|G|940
9GHF|1|a|A|941
9GHF|1|a|G|942
9GHF|1|a|A|943
9GHF|1|a|C|944
9GHF|1|a|A|945
9GHF|1|a|C|946
*
9GHF|1|a|G|971
9GHF|1|a|A|972
9GHF|1|a|A|973
9GHF|1|a|G|974
9GHF|1|a|A|975
9GHF|1|a|G|976
*
9GHF|1|a|C|987
9GHF|1|a|A|988
9GHF|1|a|G|989
9GHF|1|a|A|990
9GHF|1|a|C|991
*
9GHF|1|a|G|1163
9GHF|1|a|C|1164
*
9GHF|1|a|G|1185
9GHF|1|a|G|1186
9GHF|1|a|G|1187
9GHF|1|a|U|1188
9GHF|1|a|A|1189
9GHF|1|a|G|1190

Current chains

Chain a
23S rRNA

Nearby chains

Chain 2
50S ribosomal protein L35
Chain b
5S ribosomal RNA; 5S rRNA
Chain k
50S ribosomal protein L15
Chain p
50S ribosomal protein L20
Chain q
50S ribosomal protein L21
Chain y
50S ribosomal protein L30

Coloring options:

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