J7_9H4N_001
3D structure
- PDB id
- 9H4N (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- RPL13 (eL13)-mutant 80S ribosome from mouse
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.46 Å
Loop
- Sequence
- CGAAGU*AG*UGGG*CGCUGC*GAACG*CC*GAGUAG
- Length
- 31 nucleotides
- Bulged bases
- 9H4N|1|A2|G|1656
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9H4N|1|A2|C|1479
9H4N|1|A2|G|1480
9H4N|1|A2|A|1481
9H4N|1|A2|A|1482
9H4N|1|A2|G|1483
9H4N|1|A2|U|1484
*
9H4N|1|A2|A|1497
9H4N|1|A2|G|1498
*
9H4N|1|A2|U|1654
9H4N|1|A2|G|1655
9H4N|1|A2|G|1656
9H4N|1|A2|G|1657
*
9H4N|1|A2|C|1681
9H4N|1|A2|G|1682
9H4N|1|A2|C|1683
9H4N|1|A2|U|1684
9H4N|1|A2|G|1685
9H4N|1|A2|C|1686
*
9H4N|1|A2|G|1697
9H4N|1|A2|A|1698
9H4N|1|A2|A|1699
9H4N|1|A2|C|1700
9H4N|1|A2|G|1701
*
9H4N|1|A2|C|1879
9H4N|1|A2|C|1880
*
9H4N|1|A2|G|2033
9H4N|1|A2|A|2034
9H4N|1|A2|G|2035
9H4N|1|A2|U|2036
9H4N|1|A2|A|2037
9H4N|1|A2|G|2038
Current chains
- Chain A2
- 28S ribosomal RNA
Nearby chains
- Chain A1
- Large ribosomal subunit protein uL30
- Chain B2
- 5S ribosomal RNA; 5S rRNA
- Chain F1
- Large ribosomal subunit protein eL13
- Chain F2
- Large ribosomal subunit protein uL4
- Chain K2
- Large ribosomal subunit protein eL18
- Chain N2
- Large ribosomal subunit protein eL21
- Chain U2
- 60S ribosomal protein L27a
- Chain V2
- Large ribosomal subunit protein eL29
- Chain Y2
- Large ribosomal subunit protein eL32
- Chain Z2
- 60S ribosomal protein L35a
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