J7_9IOT_002
3D structure
- PDB id
- 9IOT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of Escherichia coli hibernating ribosome with RNase I mutant
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- CGAAAG*CGCC*GAGACAC*GAAGAG*CAGAC*GC*GGGUAG
- Length
- 36 nucleotides
- Bulged bases
- 9IOT|1|A|A|945
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9IOT|1|A|C|817
9IOT|1|A|G|818
9IOT|1|A|A|819
9IOT|1|A|A|820
9IOT|1|A|A|821
9IOT|1|A|G|822
*
9IOT|1|A|C|835
9IOT|1|A|G|836
9IOT|1|A|C|837
9IOT|1|A|C|838
*
9IOT|1|A|G|940
9IOT|1|A|A|941
9IOT|1|A|G|942
9IOT|1|A|A|943
9IOT|1|A|C|944
9IOT|1|A|A|945
9IOT|1|A|C|946
*
9IOT|1|A|G|971
9IOT|1|A|A|972
9IOT|1|A|A|973
9IOT|1|A|G|974
9IOT|1|A|A|975
9IOT|1|A|G|976
*
9IOT|1|A|C|987
9IOT|1|A|A|988
9IOT|1|A|G|989
9IOT|1|A|A|990
9IOT|1|A|C|991
*
9IOT|1|A|G|1163
9IOT|1|A|C|1164
*
9IOT|1|A|G|1185
9IOT|1|A|G|1186
9IOT|1|A|G|1187
9IOT|1|A|U|1188
9IOT|1|A|A|1189
9IOT|1|A|G|1190
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain 1
- Large ribosomal subunit protein uL30
- Chain 6
- Large ribosomal subunit protein bL35
- Chain B
- 5S ribosomal RNA; 5S rRNA
- Chain N
- Large ribosomal subunit protein uL15
- Chain S
- Large ribosomal subunit protein bL20
- Chain T
- 50S ribosomal protein L21
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