J7_9KDU_001
3D structure
- PDB id
- 9KDU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.96 Å
Loop
- Sequence
- CGAAGU*AG*UGGG*CGCUGC*GAACG*CC*GAGUAG
- Length
- 31 nucleotides
- Bulged bases
- 9KDU|1|L5|G|1657
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9KDU|1|L5|C|1480
9KDU|1|L5|G|1481
9KDU|1|L5|A|1482
9KDU|1|L5|A|1483
9KDU|1|L5|G|1484
9KDU|1|L5|U|1485
*
9KDU|1|L5|A|1498
9KDU|1|L5|G|1499
*
9KDU|1|L5|U|1655
9KDU|1|L5|G|1656
9KDU|1|L5|G|1657
9KDU|1|L5|G|1658
*
9KDU|1|L5|C|1682
9KDU|1|L5|G|1683
9KDU|1|L5|C|1684
9KDU|1|L5|U|1685
9KDU|1|L5|G|1686
9KDU|1|L5|C|1687
*
9KDU|1|L5|G|1698
9KDU|1|L5|A|1699
9KDU|1|L5|A|1700
9KDU|1|L5|C|1701
9KDU|1|L5|G|1702
*
9KDU|1|L5|C|1880
9KDU|1|L5|C|1881
*
9KDU|1|L5|G|2035
9KDU|1|L5|A|2036
9KDU|1|L5|G|2037
9KDU|1|L5|U|2038
9KDU|1|L5|A|2039
9KDU|1|L5|G|2040
Current chains
- Chain L5
- Mus musculus 28S ribosomal RNA
Nearby chains
- Chain L7
- 5S ribosomal RNA; 5S rRNA
- Chain LC
- Large ribosomal subunit protein uL4
- Chain LF
- Large ribosomal subunit protein uL30
- Chain LL
- Large ribosomal subunit protein eL13
- Chain LQ
- Large ribosomal subunit protein eL18
- Chain LT
- Large ribosomal subunit protein eL21
- Chain La
- Large ribosomal subunit protein uL15
- Chain Lb
- Large ribosomal subunit protein eL29
- Chain Le
- Large ribosomal subunit protein eL32
- Chain Lf
- Large ribosomal subunit protein eL33
Coloring options: