J7_9KDU_002
3D structure
- PDB id
- 9KDU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.96 Å
Loop
- Sequence
- CAUG*CGAAUGGCUCAUUAAAUC*GCC*GUGAC*GGAGAG*CAC*GGCAG
- Length
- 44 nucleotides
- Bulged bases
- 9KDU|1|S2|U|55, 9KDU|1|S2|A|91, 9KDU|1|S2|C|98, 9KDU|1|S2|G|408, 9KDU|1|S2|C|473
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9KDU|1|S2|C|53
9KDU|1|S2|A|54
9KDU|1|S2|U|55
9KDU|1|S2|G|56
*
9KDU|1|S2|C|89
9KDU|1|S2|G|90
9KDU|1|S2|A|91
9KDU|1|S2|A|92
9KDU|1|S2|U|93
9KDU|1|S2|G|94
9KDU|1|S2|G|95
9KDU|1|S2|C|96
9KDU|1|S2|U|97
9KDU|1|S2|C|98
9KDU|1|S2|A|99
9KDU|1|S2|U|100
9KDU|1|S2|U|101
9KDU|1|S2|A|102
9KDU|1|S2|A|103
9KDU|1|S2|A|104
9KDU|1|S2|U|105
9KDU|1|S2|C|106
*
9KDU|1|S2|G|356
9KDU|1|S2|C|357
9KDU|1|S2|C|358
*
9KDU|1|S2|G|406
9KDU|1|S2|U|407
9KDU|1|S2|G|408
9KDU|1|S2|A|409
9KDU|1|S2|C|410
*
9KDU|1|S2|G|432
9KDU|1|S2|G|433
9KDU|1|S2|A|434
9KDU|1|S2|G|435
9KDU|1|S2|A|436
9KDU|1|S2|G|437
*
9KDU|1|S2|C|458
9KDU|1|S2|A|459
9KDU|1|S2|C|460
*
9KDU|1|S2|G|471
9KDU|1|S2|G|472
9KDU|1|S2|C|473
9KDU|1|S2|A|474
9KDU|1|S2|G|475
Current chains
- Chain S2
- Mus musculus 18S ribosomal RNA
Nearby chains
- Chain LV
- Large ribosomal subunit protein uL14
- Chain SE
- Small ribosomal subunit protein eS4
- Chain SG
- Small ribosomal subunit protein eS6
- Chain SI
- Small ribosomal subunit protein eS8
- Chain SJ
- Small ribosomal subunit protein uS4
- Chain SL
- Small ribosomal subunit protein uS17
- Chain SX
- Small ribosomal subunit protein uS12
- Chain SY
- Small ribosomal subunit protein eS24
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