J7_9MTP_002

3D structure

PDB id

9MTP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with mRNA, A-site Q230-N5-methylated Release Factor 1, and P-site fMEAAAKC-peptidyl-tRNAcys at 2.40A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

CGAAAU*AG*UGAG*CGAGCGC*GAGAC*GG*CGGUAG

Length

32 nucleotides

Bulged bases

9MTP|1|1A|A|945, 9MTP|1|1A|C|975

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9MTP|1|1A|C|817
9MTP|1|1A|G|818
9MTP|1|1A|A|819
9MTP|1|1A|A|820
9MTP|1|1A|A|821
9MTP|1|1A|U|822
*
9MTP|1|1A|A|835
9MTP|1|1A|G|836
*
9MTP|1|1A|U|943
9MTP|1|1A|G|944
9MTP|1|1A|A|945
9MTP|1|1A|G|946
*
9MTP|1|1A|C|971
9MTP|1|1A|G|972
9MTP|1|1A|A|973
9MTP|1|1A|G|974
9MTP|1|1A|C|975
9MTP|1|1A|G|975|||A
9MTP|1|1A|C|976
*
9MTP|1|1A|G|987
9MTP|1|1A|A|988
9MTP|1|1A|G|989
9MTP|1|1A|A|990
9MTP|1|1A|C|991
*
9MTP|1|1A|G|1163
9MTP|1|1A|G|1164
*
9MTP|1|1A|C|1185
9MTP|1|1A|G|1186
9MTP|1|1A|G|1187
9MTP|1|1A|U|1188
9MTP|1|1A|A|1189
9MTP|1|1A|G|1190

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 13

50S ribosomal protein L30

Chain 18

50S ribosomal protein L35

Chain 1B

5S ribosomal RNA; 5S rRNA

Chain 1P

50S ribosomal protein L15

Chain 1U

50S ribosomal protein L20

Chain 1V

50S ribosomal protein L21