J7_9MTP_003

3D structure

PDB id

9MTP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with mRNA, A-site Q230-N5-methylated Release Factor 1, and P-site fMEAAAKC-peptidyl-tRNAcys at 2.40A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

AUGGUAAG*UACAAGC*GAACUG*CUAC*GCGCAG*CC*GU

Length

35 nucleotides

Bulged bases

9MTP|1|2A|G|530, 9MTP|1|2A|C|2021

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9MTP|1|2A|A|8
9MTP|1|2A|U|9
9MTP|1|2A|G|10
9MTP|1|2A|G|11
9MTP|1|2A|U|12
9MTP|1|2A|A|13
9MTP|1|2A|A|14
9MTP|1|2A|G|15
*
9MTP|1|2A|U|525
9MTP|1|2A|A|526
9MTP|1|2A|C|527
9MTP|1|2A|A|528
9MTP|1|2A|A|529
9MTP|1|2A|G|530
9MTP|1|2A|C|531
*
9MTP|1|2A|G|2018
9MTP|1|2A|A|2019
9MTP|1|2A|A|2020
9MTP|1|2A|C|2021
9MTP|1|2A|U|2022
9MTP|1|2A|G|2023
*
9MTP|1|2A|C|2040
9MTP|1|2A|U|2041
9MTP|1|2A|A|2042
9MTP|1|2A|C|2043
*
9MTP|1|2A|G|2625
9MTP|1|2A|C|2626
9MTP|1|2A|G|2627
9MTP|1|2A|C|2628
9MTP|1|2A|A|2629
9MTP|1|2A|G|2630
*
9MTP|1|2A|C|2788
9MTP|1|2A|C|2789
*
9MTP|1|2A|G|2894
9MTP|1|2A|U|2895

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 25

50S ribosomal protein L32

Chain 2E

50S ribosomal protein L3

Chain 2N

50S ribosomal protein L13

Chain 2U

50S ribosomal protein L20

Chain 2W

50S ribosomal protein L22