J7_9MTQ_003

3D structure

PDB id

9MTQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with mRNA, A-site GGD-mutant Release Factor 1, and P-site fMEAAAKC-peptidyl-tRNAcys at 2.55A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

AUGGUAAG*UACAAGC*GAACUG*CUAC*GCGCAG*CC*GU

Length

35 nucleotides

Bulged bases

9MTQ|1|2A|G|530, 9MTQ|1|2A|C|2021

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9MTQ|1|2A|A|8
9MTQ|1|2A|U|9
9MTQ|1|2A|G|10
9MTQ|1|2A|G|11
9MTQ|1|2A|U|12
9MTQ|1|2A|A|13
9MTQ|1|2A|A|14
9MTQ|1|2A|G|15
*
9MTQ|1|2A|U|525
9MTQ|1|2A|A|526
9MTQ|1|2A|C|527
9MTQ|1|2A|A|528
9MTQ|1|2A|A|529
9MTQ|1|2A|G|530
9MTQ|1|2A|C|531
*
9MTQ|1|2A|G|2018
9MTQ|1|2A|A|2019
9MTQ|1|2A|A|2020
9MTQ|1|2A|C|2021
9MTQ|1|2A|U|2022
9MTQ|1|2A|G|2023
*
9MTQ|1|2A|C|2040
9MTQ|1|2A|U|2041
9MTQ|1|2A|A|2042
9MTQ|1|2A|C|2043
*
9MTQ|1|2A|G|2625
9MTQ|1|2A|C|2626
9MTQ|1|2A|G|2627
9MTQ|1|2A|C|2628
9MTQ|1|2A|A|2629
9MTQ|1|2A|G|2630
*
9MTQ|1|2A|C|2788
9MTQ|1|2A|C|2789
*
9MTQ|1|2A|G|2894
9MTQ|1|2A|U|2895

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 25

50S ribosomal protein L32

Chain 2E

50S ribosomal protein L3

Chain 2N

50S ribosomal protein L13

Chain 2U

50S ribosomal protein L20

Chain 2W

50S ribosomal protein L22