J7_9MTQ_004

3D structure

PDB id

9MTQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with mRNA, A-site GGD-mutant Release Factor 1, and P-site fMEAAAKC-peptidyl-tRNAcys at 2.55A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

CGAAAU*AG*UGAG*CGAGCGC*GAGAC*GG*CGGUAG

Length

32 nucleotides

Bulged bases

9MTQ|1|2A|A|945, 9MTQ|1|2A|C|975

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9MTQ|1|2A|C|817
9MTQ|1|2A|G|818
9MTQ|1|2A|A|819
9MTQ|1|2A|A|820
9MTQ|1|2A|A|821
9MTQ|1|2A|U|822
*
9MTQ|1|2A|A|835
9MTQ|1|2A|G|836
*
9MTQ|1|2A|U|943
9MTQ|1|2A|G|944
9MTQ|1|2A|A|945
9MTQ|1|2A|G|946
*
9MTQ|1|2A|C|971
9MTQ|1|2A|G|972
9MTQ|1|2A|A|973
9MTQ|1|2A|G|974
9MTQ|1|2A|C|975
9MTQ|1|2A|G|975|||A
9MTQ|1|2A|C|976
*
9MTQ|1|2A|G|987
9MTQ|1|2A|A|988
9MTQ|1|2A|G|989
9MTQ|1|2A|A|990
9MTQ|1|2A|C|991
*
9MTQ|1|2A|G|1163
9MTQ|1|2A|G|1164
*
9MTQ|1|2A|C|1185
9MTQ|1|2A|G|1186
9MTQ|1|2A|G|1187
9MTQ|1|2A|U|1188
9MTQ|1|2A|A|1189
9MTQ|1|2A|G|1190

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 23

50S ribosomal protein L30

Chain 28

50S ribosomal protein L35

Chain 2B

5S ribosomal RNA; 5S rRNA

Chain 2P

50S ribosomal protein L15

Chain 2U

50S ribosomal protein L20

Chain 2V

50S ribosomal protein L21