J7_9MTR_002

3D structure

PDB id

9MTR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with mRNA, A-site GGS-mutant Release Factor 1, and P-site fMEAAAKC-peptidyl-tRNAcys at 2.80A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

AUGGUAAG*UACAAGC*GAACUG*CUAC*GCGCAG*CC*GU

Length

35 nucleotides

Bulged bases

9MTR|1|2A|G|530, 9MTR|1|2A|C|2021

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9MTR|1|2A|A|8
9MTR|1|2A|U|9
9MTR|1|2A|G|10
9MTR|1|2A|G|11
9MTR|1|2A|U|12
9MTR|1|2A|A|13
9MTR|1|2A|A|14
9MTR|1|2A|G|15
*
9MTR|1|2A|U|525
9MTR|1|2A|A|526
9MTR|1|2A|C|527
9MTR|1|2A|A|528
9MTR|1|2A|A|529
9MTR|1|2A|G|530
9MTR|1|2A|C|531
*
9MTR|1|2A|G|2018
9MTR|1|2A|A|2019
9MTR|1|2A|A|2020
9MTR|1|2A|C|2021
9MTR|1|2A|U|2022
9MTR|1|2A|G|2023
*
9MTR|1|2A|C|2040
9MTR|1|2A|U|2041
9MTR|1|2A|A|2042
9MTR|1|2A|C|2043
*
9MTR|1|2A|G|2625
9MTR|1|2A|C|2626
9MTR|1|2A|G|2627
9MTR|1|2A|C|2628
9MTR|1|2A|A|2629
9MTR|1|2A|G|2630
*
9MTR|1|2A|C|2788
9MTR|1|2A|C|2789
*
9MTR|1|2A|G|2894
9MTR|1|2A|U|2895

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 25

50S ribosomal protein L32

Chain 2E

50S ribosomal protein L3

Chain 2N

50S ribosomal protein L13

Chain 2U

50S ribosomal protein L20

Chain 2W

50S ribosomal protein L22