J7_9MTR_003

3D structure

PDB id

9MTR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with mRNA, A-site GGS-mutant Release Factor 1, and P-site fMEAAAKC-peptidyl-tRNAcys at 2.80A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CGAAAU*AG*UGAG*CGAGCGC*GAGAC*GG*CGGUAG

Length

32 nucleotides

Bulged bases

9MTR|1|2A|A|945, 9MTR|1|2A|C|975

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9MTR|1|2A|C|817
9MTR|1|2A|G|818
9MTR|1|2A|A|819
9MTR|1|2A|A|820
9MTR|1|2A|A|821
9MTR|1|2A|U|822
*
9MTR|1|2A|A|835
9MTR|1|2A|G|836
*
9MTR|1|2A|U|943
9MTR|1|2A|G|944
9MTR|1|2A|A|945
9MTR|1|2A|G|946
*
9MTR|1|2A|C|971
9MTR|1|2A|G|972
9MTR|1|2A|A|973
9MTR|1|2A|G|974
9MTR|1|2A|C|975
9MTR|1|2A|G|975|||A
9MTR|1|2A|C|976
*
9MTR|1|2A|G|987
9MTR|1|2A|A|988
9MTR|1|2A|G|989
9MTR|1|2A|A|990
9MTR|1|2A|C|991
*
9MTR|1|2A|G|1163
9MTR|1|2A|G|1164
*
9MTR|1|2A|C|1185
9MTR|1|2A|G|1186
9MTR|1|2A|G|1187
9MTR|1|2A|U|1188
9MTR|1|2A|A|1189
9MTR|1|2A|G|1190

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 23

50S ribosomal protein L30

Chain 28

50S ribosomal protein L35

Chain 2B

5S ribosomal RNA; 5S rRNA

Chain 2P

50S ribosomal protein L15

Chain 2U

50S ribosomal protein L20

Chain 2V

50S ribosomal protein L21