J7_9MTT_002

3D structure

PDB id

9MTT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with mRNA, A-site Q230-N5-methylated Release Factor 1, and P-site deacylated-tRNAcys at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

CGAAAU*AG*UGAG*CGAGCGC*GAGAC*GG*CGGUAG

Length

32 nucleotides

Bulged bases

9MTT|1|1A|A|945, 9MTT|1|1A|C|975

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9MTT|1|1A|C|817
9MTT|1|1A|G|818
9MTT|1|1A|A|819
9MTT|1|1A|A|820
9MTT|1|1A|A|821
9MTT|1|1A|U|822
*
9MTT|1|1A|A|835
9MTT|1|1A|G|836
*
9MTT|1|1A|U|943
9MTT|1|1A|G|944
9MTT|1|1A|A|945
9MTT|1|1A|G|946
*
9MTT|1|1A|C|971
9MTT|1|1A|G|972
9MTT|1|1A|A|973
9MTT|1|1A|G|974
9MTT|1|1A|C|975
9MTT|1|1A|G|975|||A
9MTT|1|1A|C|976
*
9MTT|1|1A|G|987
9MTT|1|1A|A|988
9MTT|1|1A|G|989
9MTT|1|1A|A|990
9MTT|1|1A|C|991
*
9MTT|1|1A|G|1163
9MTT|1|1A|G|1164
*
9MTT|1|1A|C|1185
9MTT|1|1A|G|1186
9MTT|1|1A|G|1187
9MTT|1|1A|U|1188
9MTT|1|1A|A|1189
9MTT|1|1A|G|1190

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 13

50S ribosomal protein L30

Chain 18

50S ribosomal protein L35

Chain 1B

5S ribosomal RNA; 5S rRNA

Chain 1P

50S ribosomal protein L15

Chain 1U

50S ribosomal protein L20

Chain 1V

50S ribosomal protein L21