J7_9N2B_001

3D structure

PDB id

9N2B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Impacts of ribosomal RNA sequence variation on gene expression and phenotype: Cryo-EM structure of the rrsB ribosome (BBB-70S)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CGACUAAG*UACAAGC*GAACUC*GUAC*GCGCUG*CC*GG

Length

35 nucleotides

Bulged bases

9N2B|1|23|C|2021

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9N2B|1|23|C|8
9N2B|1|23|G|9
9N2B|1|23|A|10
9N2B|1|23|C|11
9N2B|1|23|U|12
9N2B|1|23|A|13
9N2B|1|23|A|14
9N2B|1|23|G|15
*
9N2B|1|23|U|525
9N2B|1|23|A|526
9N2B|1|23|C|527
9N2B|1|23|A|528
9N2B|1|23|A|529
9N2B|1|23|G|530
9N2B|1|23|C|531
*
9N2B|1|23|G|2018
9N2B|1|23|A|2019
9N2B|1|23|A|2020
9N2B|1|23|C|2021
9N2B|1|23|U|2022
9N2B|1|23|C|2023
*
9N2B|1|23|G|2040
9N2B|1|23|U|2041
9N2B|1|23|A|2042
9N2B|1|23|C|2043
*
9N2B|1|23|G|2625
9N2B|1|23|C|2626
9N2B|1|23|G|2627
9N2B|1|23|C|2628
9N2B|1|23|U|2629
9N2B|1|23|G|2630
*
9N2B|1|23|C|2788
9N2B|1|23|C|2789
*
9N2B|1|23|G|2894
9N2B|1|23|G|2895

Current chains

Chain 23

23S ribosomal RNA (rRNA) from the rrnB operon

Nearby chains

Chain LC

50S ribosomal protein L3

Chain LM

50S ribosomal protein L13

Chain LT

50S ribosomal protein L20

Chain LV

Large ribosomal subunit protein uL22

Chain Lf

50S ribosomal protein L32