J7_9N2B_002

3D structure

PDB id

9N2B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Impacts of ribosomal RNA sequence variation on gene expression and phenotype: Cryo-EM structure of the rrsB ribosome (BBB-70S)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CGAAAG*CGCC*GAGACAC*GAAGAG*CAGAC*GC*GGGUAG

Length

36 nucleotides

Bulged bases

9N2B|1|23|A|945

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9N2B|1|23|C|817
9N2B|1|23|G|818
9N2B|1|23|A|819
9N2B|1|23|A|820
9N2B|1|23|A|821
9N2B|1|23|G|822
*
9N2B|1|23|C|835
9N2B|1|23|G|836
9N2B|1|23|C|837
9N2B|1|23|C|838
*
9N2B|1|23|G|940
9N2B|1|23|A|941
9N2B|1|23|G|942
9N2B|1|23|A|943
9N2B|1|23|C|944
9N2B|1|23|A|945
9N2B|1|23|C|946
*
9N2B|1|23|G|971
9N2B|1|23|A|972
9N2B|1|23|A|973
9N2B|1|23|G|974
9N2B|1|23|A|975
9N2B|1|23|G|976
*
9N2B|1|23|C|987
9N2B|1|23|A|988
9N2B|1|23|G|989
9N2B|1|23|A|990
9N2B|1|23|C|991
*
9N2B|1|23|G|1163
9N2B|1|23|C|1164
*
9N2B|1|23|G|1185
9N2B|1|23|G|1186
9N2B|1|23|G|1187
9N2B|1|23|U|1188
9N2B|1|23|A|1189
9N2B|1|23|G|1190

Current chains

Chain 23

23S ribosomal RNA (rRNA) from the rrnB operon

Nearby chains

Chain 5

5S ribosomal RNA; 5S rRNA

Chain LO

50S ribosomal protein L15

Chain LT

50S ribosomal protein L20

Chain LU

50S ribosomal protein L21

Chain Ld

50S ribosomal protein L30

Chain Li

50S ribosomal protein L35