J7_9NJF_001

3D structure

PDB id

9NJF (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli pre-elongation complex without an A-site tRNA with EQ2-YbiT in Non-hydrolytic 1/PtIM(a) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CGACUAAG*UACAAGC*GAACUC*GUAC*GCGCUG*CC*GG

Length

35 nucleotides

Bulged bases

9NJF|1|R1|C|2021

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9NJF|1|R1|C|8
9NJF|1|R1|G|9
9NJF|1|R1|A|10
9NJF|1|R1|C|11
9NJF|1|R1|U|12
9NJF|1|R1|A|13
9NJF|1|R1|A|14
9NJF|1|R1|G|15
*
9NJF|1|R1|U|525
9NJF|1|R1|A|526
9NJF|1|R1|C|527
9NJF|1|R1|A|528
9NJF|1|R1|A|529
9NJF|1|R1|G|530
9NJF|1|R1|C|531
*
9NJF|1|R1|G|2018
9NJF|1|R1|A|2019
9NJF|1|R1|A|2020
9NJF|1|R1|C|2021
9NJF|1|R1|U|2022
9NJF|1|R1|C|2023
*
9NJF|1|R1|G|2040
9NJF|1|R1|U|2041
9NJF|1|R1|A|2042
9NJF|1|R1|C|2043
*
9NJF|1|R1|G|2625
9NJF|1|R1|C|2626
9NJF|1|R1|G|2627
9NJF|1|R1|C|2628
9NJF|1|R1|U|2629
9NJF|1|R1|G|2630
*
9NJF|1|R1|C|2788
9NJF|1|R1|C|2789
*
9NJF|1|R1|G|2894
9NJF|1|R1|G|2895

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 13

Large ribosomal subunit protein uL13

Chain 20

Large ribosomal subunit protein bL20

Chain 21

Large ribosomal subunit protein bL21

Chain 22

Large ribosomal subunit protein uL22

Chain 3

50S ribosomal protein L3

Chain 32

50S ribosomal protein L32