J7_9NJF_002

3D structure

PDB id

9NJF (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli pre-elongation complex without an A-site tRNA with EQ2-YbiT in Non-hydrolytic 1/PtIM(a) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CGAAAG*CGCC*GAGACAC*GAAGAG*CAGAC*GC*GGGUAG

Length

36 nucleotides

Bulged bases

9NJF|1|R1|A|945

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9NJF|1|R1|C|817
9NJF|1|R1|G|818
9NJF|1|R1|A|819
9NJF|1|R1|A|820
9NJF|1|R1|A|821
9NJF|1|R1|G|822
*
9NJF|1|R1|C|835
9NJF|1|R1|G|836
9NJF|1|R1|C|837
9NJF|1|R1|C|838
*
9NJF|1|R1|G|940
9NJF|1|R1|A|941
9NJF|1|R1|G|942
9NJF|1|R1|A|943
9NJF|1|R1|C|944
9NJF|1|R1|A|945
9NJF|1|R1|C|946
*
9NJF|1|R1|G|971
9NJF|1|R1|A|972
9NJF|1|R1|A|973
9NJF|1|R1|G|974
9NJF|1|R1|A|975
9NJF|1|R1|G|976
*
9NJF|1|R1|C|987
9NJF|1|R1|A|988
9NJF|1|R1|G|989
9NJF|1|R1|A|990
9NJF|1|R1|C|991
*
9NJF|1|R1|G|1163
9NJF|1|R1|C|1164
*
9NJF|1|R1|G|1185
9NJF|1|R1|G|1186
9NJF|1|R1|G|1187
9NJF|1|R1|U|1188
9NJF|1|R1|A|1189
9NJF|1|R1|G|1190

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 15

50S ribosomal protein L15

Chain 20

Large ribosomal subunit protein bL20

Chain 21

Large ribosomal subunit protein bL21

Chain 30

50S ribosomal protein L30

Chain 35

Large ribosomal subunit protein bL35

Chain R2

5S ribosomal RNA; 5S rRNA