J7_9NKL_001

3D structure

PDB id

9NKL (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CGACUAAG*UACAAGC*GAACUC*GUAC*GCGCUG*CC*GG

Length

35 nucleotides

Bulged bases

9NKL|1|R1|C|2021

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9NKL|1|R1|C|8
9NKL|1|R1|G|9
9NKL|1|R1|A|10
9NKL|1|R1|C|11
9NKL|1|R1|U|12
9NKL|1|R1|A|13
9NKL|1|R1|A|14
9NKL|1|R1|G|15
*
9NKL|1|R1|U|525
9NKL|1|R1|A|526
9NKL|1|R1|C|527
9NKL|1|R1|A|528
9NKL|1|R1|A|529
9NKL|1|R1|G|530
9NKL|1|R1|C|531
*
9NKL|1|R1|G|2018
9NKL|1|R1|A|2019
9NKL|1|R1|A|2020
9NKL|1|R1|C|2021
9NKL|1|R1|U|2022
9NKL|1|R1|C|2023
*
9NKL|1|R1|G|2040
9NKL|1|R1|U|2041
9NKL|1|R1|A|2042
9NKL|1|R1|C|2043
*
9NKL|1|R1|G|2625
9NKL|1|R1|C|2626
9NKL|1|R1|G|2627
9NKL|1|R1|C|2628
9NKL|1|R1|U|2629
9NKL|1|R1|G|2630
*
9NKL|1|R1|C|2788
9NKL|1|R1|C|2789
*
9NKL|1|R1|G|2894
9NKL|1|R1|G|2895

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 13

Large ribosomal subunit protein uL13

Chain 20

Large ribosomal subunit protein bL20

Chain 22

Large ribosomal subunit protein uL22

Chain 3

50S ribosomal protein L3

Chain 32

50S ribosomal protein L32