J7_9NL5_001

3D structure

PDB id

9NL5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli pre-elongation complex without an A-site tRNA with EQ2-EttA in Hydrolytic 1 conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CGACUAAG*UACAAGC*GAACUC*GUAC*GCGCUG*CC*GG

Length

35 nucleotides

Bulged bases

9NL5|1|R1|C|2021

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9NL5|1|R1|C|8
9NL5|1|R1|G|9
9NL5|1|R1|A|10
9NL5|1|R1|C|11
9NL5|1|R1|U|12
9NL5|1|R1|A|13
9NL5|1|R1|A|14
9NL5|1|R1|G|15
*
9NL5|1|R1|U|525
9NL5|1|R1|A|526
9NL5|1|R1|C|527
9NL5|1|R1|A|528
9NL5|1|R1|A|529
9NL5|1|R1|G|530
9NL5|1|R1|C|531
*
9NL5|1|R1|G|2018
9NL5|1|R1|A|2019
9NL5|1|R1|A|2020
9NL5|1|R1|C|2021
9NL5|1|R1|U|2022
9NL5|1|R1|C|2023
*
9NL5|1|R1|G|2040
9NL5|1|R1|U|2041
9NL5|1|R1|A|2042
9NL5|1|R1|C|2043
*
9NL5|1|R1|G|2625
9NL5|1|R1|C|2626
9NL5|1|R1|G|2627
9NL5|1|R1|C|2628
9NL5|1|R1|U|2629
9NL5|1|R1|G|2630
*
9NL5|1|R1|C|2788
9NL5|1|R1|C|2789
*
9NL5|1|R1|G|2894
9NL5|1|R1|G|2895

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 13

Large ribosomal subunit protein uL13

Chain 20

Large ribosomal subunit protein bL20

Chain 22

Large ribosomal subunit protein uL22

Chain 3

50S ribosomal protein L3

Chain 32

50S ribosomal protein L32