J7_9NL6_001

3D structure

PDB id

9NL6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-YbiT in Non-hydrolytic 1/PtIM(a) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGACUAAG*UACAAGC*GAACUC*GUAC*GCGCUG*CC*GG

Length

35 nucleotides

Bulged bases

9NL6|1|R1|C|2021

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9NL6|1|R1|C|8
9NL6|1|R1|G|9
9NL6|1|R1|A|10
9NL6|1|R1|C|11
9NL6|1|R1|U|12
9NL6|1|R1|A|13
9NL6|1|R1|A|14
9NL6|1|R1|G|15
*
9NL6|1|R1|U|525
9NL6|1|R1|A|526
9NL6|1|R1|C|527
9NL6|1|R1|A|528
9NL6|1|R1|A|529
9NL6|1|R1|G|530
9NL6|1|R1|C|531
*
9NL6|1|R1|G|2018
9NL6|1|R1|A|2019
9NL6|1|R1|A|2020
9NL6|1|R1|C|2021
9NL6|1|R1|U|2022
9NL6|1|R1|C|2023
*
9NL6|1|R1|G|2040
9NL6|1|R1|U|2041
9NL6|1|R1|A|2042
9NL6|1|R1|C|2043
*
9NL6|1|R1|G|2625
9NL6|1|R1|C|2626
9NL6|1|R1|G|2627
9NL6|1|R1|C|2628
9NL6|1|R1|U|2629
9NL6|1|R1|G|2630
*
9NL6|1|R1|C|2788
9NL6|1|R1|C|2789
*
9NL6|1|R1|G|2894
9NL6|1|R1|G|2895

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 13

Large ribosomal subunit protein uL13

Chain 20

Large ribosomal subunit protein bL20

Chain 22

Large ribosomal subunit protein uL22

Chain 3

50S ribosomal protein L3

Chain 32

50S ribosomal protein L32