J7_9NLE_001

3D structure

PDB id

9NLE (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-EttA in Hydrolytic 1 conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGACUAAG*UACAAGC*GAACUC*GUAC*GCGCUG*CC*GG

Length

35 nucleotides

Bulged bases

9NLE|1|R1|C|2021

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9NLE|1|R1|C|8
9NLE|1|R1|G|9
9NLE|1|R1|A|10
9NLE|1|R1|C|11
9NLE|1|R1|U|12
9NLE|1|R1|A|13
9NLE|1|R1|A|14
9NLE|1|R1|G|15
*
9NLE|1|R1|U|525
9NLE|1|R1|A|526
9NLE|1|R1|C|527
9NLE|1|R1|A|528
9NLE|1|R1|A|529
9NLE|1|R1|G|530
9NLE|1|R1|C|531
*
9NLE|1|R1|G|2018
9NLE|1|R1|A|2019
9NLE|1|R1|A|2020
9NLE|1|R1|C|2021
9NLE|1|R1|U|2022
9NLE|1|R1|C|2023
*
9NLE|1|R1|G|2040
9NLE|1|R1|U|2041
9NLE|1|R1|A|2042
9NLE|1|R1|C|2043
*
9NLE|1|R1|G|2625
9NLE|1|R1|C|2626
9NLE|1|R1|G|2627
9NLE|1|R1|C|2628
9NLE|1|R1|U|2629
9NLE|1|R1|G|2630
*
9NLE|1|R1|C|2788
9NLE|1|R1|C|2789
*
9NLE|1|R1|G|2894
9NLE|1|R1|G|2895

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 13

Large ribosomal subunit protein uL13

Chain 20

Large ribosomal subunit protein bL20

Chain 22

Large ribosomal subunit protein uL22

Chain 3

50S ribosomal protein L3

Chain 32

50S ribosomal protein L32