J7_9NLF_001

3D structure

PDB id

9NLF (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-YbiT in Hydrolytic 2/PtIM(a) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGACUAAG*UACAAGC*GAACUC*GUAC*GCGCUG*CC*GG

Length

35 nucleotides

Bulged bases

9NLF|1|R1|C|2021

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9NLF|1|R1|C|8
9NLF|1|R1|G|9
9NLF|1|R1|A|10
9NLF|1|R1|C|11
9NLF|1|R1|U|12
9NLF|1|R1|A|13
9NLF|1|R1|A|14
9NLF|1|R1|G|15
*
9NLF|1|R1|U|525
9NLF|1|R1|A|526
9NLF|1|R1|C|527
9NLF|1|R1|A|528
9NLF|1|R1|A|529
9NLF|1|R1|G|530
9NLF|1|R1|C|531
*
9NLF|1|R1|G|2018
9NLF|1|R1|A|2019
9NLF|1|R1|A|2020
9NLF|1|R1|C|2021
9NLF|1|R1|U|2022
9NLF|1|R1|C|2023
*
9NLF|1|R1|G|2040
9NLF|1|R1|U|2041
9NLF|1|R1|A|2042
9NLF|1|R1|C|2043
*
9NLF|1|R1|G|2625
9NLF|1|R1|C|2626
9NLF|1|R1|G|2627
9NLF|1|R1|C|2628
9NLF|1|R1|U|2629
9NLF|1|R1|G|2630
*
9NLF|1|R1|C|2788
9NLF|1|R1|C|2789
*
9NLF|1|R1|G|2894
9NLF|1|R1|G|2895

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 13

Large ribosomal subunit protein uL13

Chain 20

Large ribosomal subunit protein bL20

Chain 22

Large ribosomal subunit protein uL22

Chain 3

50S ribosomal protein L3

Chain 32

50S ribosomal protein L32