J7_9NLH_001

3D structure

PDB id

9NLH (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli Initiation complex with YheS-EQ2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGACUAAG*UACAAGC*GAACUC*GUAC*GCGCUG*CC*GG

Length

35 nucleotides

Bulged bases

9NLH|1|R1|C|2021

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9NLH|1|R1|C|8
9NLH|1|R1|G|9
9NLH|1|R1|A|10
9NLH|1|R1|C|11
9NLH|1|R1|U|12
9NLH|1|R1|A|13
9NLH|1|R1|A|14
9NLH|1|R1|G|15
*
9NLH|1|R1|U|525
9NLH|1|R1|A|526
9NLH|1|R1|C|527
9NLH|1|R1|A|528
9NLH|1|R1|A|529
9NLH|1|R1|G|530
9NLH|1|R1|C|531
*
9NLH|1|R1|G|2018
9NLH|1|R1|A|2019
9NLH|1|R1|A|2020
9NLH|1|R1|C|2021
9NLH|1|R1|U|2022
9NLH|1|R1|C|2023
*
9NLH|1|R1|G|2040
9NLH|1|R1|U|2041
9NLH|1|R1|A|2042
9NLH|1|R1|C|2043
*
9NLH|1|R1|G|2625
9NLH|1|R1|C|2626
9NLH|1|R1|G|2627
9NLH|1|R1|C|2628
9NLH|1|R1|U|2629
9NLH|1|R1|G|2630
*
9NLH|1|R1|C|2788
9NLH|1|R1|C|2789
*
9NLH|1|R1|G|2894
9NLH|1|R1|G|2895

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 13

Large ribosomal subunit protein uL13

Chain 20

Large ribosomal subunit protein bL20

Chain 22

Large ribosomal subunit protein uL22

Chain 3

50S ribosomal protein L3

Chain 32

50S ribosomal protein L32