J7_9NLJ_001

3D structure

PDB id

9NLJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli Initiation complex with Uup-EQ2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGACUAAG*UACAAGC*GAACUC*GUAC*GCGCUG*CC*GG

Length

35 nucleotides

Bulged bases

9NLJ|1|R1|C|2021

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9NLJ|1|R1|C|8
9NLJ|1|R1|G|9
9NLJ|1|R1|A|10
9NLJ|1|R1|C|11
9NLJ|1|R1|U|12
9NLJ|1|R1|A|13
9NLJ|1|R1|A|14
9NLJ|1|R1|G|15
*
9NLJ|1|R1|U|525
9NLJ|1|R1|A|526
9NLJ|1|R1|C|527
9NLJ|1|R1|A|528
9NLJ|1|R1|A|529
9NLJ|1|R1|G|530
9NLJ|1|R1|C|531
*
9NLJ|1|R1|G|2018
9NLJ|1|R1|A|2019
9NLJ|1|R1|A|2020
9NLJ|1|R1|C|2021
9NLJ|1|R1|U|2022
9NLJ|1|R1|C|2023
*
9NLJ|1|R1|G|2040
9NLJ|1|R1|U|2041
9NLJ|1|R1|A|2042
9NLJ|1|R1|C|2043
*
9NLJ|1|R1|G|2625
9NLJ|1|R1|C|2626
9NLJ|1|R1|G|2627
9NLJ|1|R1|C|2628
9NLJ|1|R1|U|2629
9NLJ|1|R1|G|2630
*
9NLJ|1|R1|C|2788
9NLJ|1|R1|C|2789
*
9NLJ|1|R1|G|2894
9NLJ|1|R1|G|2895

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 13

Large ribosomal subunit protein uL13

Chain 20

Large ribosomal subunit protein bL20

Chain 22

Large ribosomal subunit protein uL22

Chain 3

50S ribosomal protein L3

Chain 32

50S ribosomal protein L32