J7_9NLQ_001

3D structure

PDB id

9NLQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-YbiT in Hydrolytic 1/PtIM(a) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CGACUAAG*UACAAGC*GAACUC*GUAC*GCGCUG*CC*GG

Length

35 nucleotides

Bulged bases

9NLQ|1|R1|C|2021

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9NLQ|1|R1|C|8
9NLQ|1|R1|G|9
9NLQ|1|R1|A|10
9NLQ|1|R1|C|11
9NLQ|1|R1|U|12
9NLQ|1|R1|A|13
9NLQ|1|R1|A|14
9NLQ|1|R1|G|15
*
9NLQ|1|R1|U|525
9NLQ|1|R1|A|526
9NLQ|1|R1|C|527
9NLQ|1|R1|A|528
9NLQ|1|R1|A|529
9NLQ|1|R1|G|530
9NLQ|1|R1|C|531
*
9NLQ|1|R1|G|2018
9NLQ|1|R1|A|2019
9NLQ|1|R1|A|2020
9NLQ|1|R1|C|2021
9NLQ|1|R1|U|2022
9NLQ|1|R1|C|2023
*
9NLQ|1|R1|G|2040
9NLQ|1|R1|U|2041
9NLQ|1|R1|A|2042
9NLQ|1|R1|C|2043
*
9NLQ|1|R1|G|2625
9NLQ|1|R1|C|2626
9NLQ|1|R1|G|2627
9NLQ|1|R1|C|2628
9NLQ|1|R1|U|2629
9NLQ|1|R1|G|2630
*
9NLQ|1|R1|C|2788
9NLQ|1|R1|C|2789
*
9NLQ|1|R1|G|2894
9NLQ|1|R1|G|2895

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 13

Large ribosomal subunit protein uL13

Chain 20

Large ribosomal subunit protein bL20

Chain 22

Large ribosomal subunit protein uL22

Chain 3

50S ribosomal protein L3

Chain 32

50S ribosomal protein L32