J7_9NLS_001

3D structure

PDB id

9NLS (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-YbiT in Intermediate/PtIM(b) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CGACUAAG*UACAAGC*GAACUC*GUAC*GCGCUG*CC*GG

Length

35 nucleotides

Bulged bases

9NLS|1|R1|C|2021

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9NLS|1|R1|C|8
9NLS|1|R1|G|9
9NLS|1|R1|A|10
9NLS|1|R1|C|11
9NLS|1|R1|U|12
9NLS|1|R1|A|13
9NLS|1|R1|A|14
9NLS|1|R1|G|15
*
9NLS|1|R1|U|525
9NLS|1|R1|A|526
9NLS|1|R1|C|527
9NLS|1|R1|A|528
9NLS|1|R1|A|529
9NLS|1|R1|G|530
9NLS|1|R1|C|531
*
9NLS|1|R1|G|2018
9NLS|1|R1|A|2019
9NLS|1|R1|A|2020
9NLS|1|R1|C|2021
9NLS|1|R1|U|2022
9NLS|1|R1|C|2023
*
9NLS|1|R1|G|2040
9NLS|1|R1|U|2041
9NLS|1|R1|A|2042
9NLS|1|R1|C|2043
*
9NLS|1|R1|G|2625
9NLS|1|R1|C|2626
9NLS|1|R1|G|2627
9NLS|1|R1|C|2628
9NLS|1|R1|U|2629
9NLS|1|R1|G|2630
*
9NLS|1|R1|C|2788
9NLS|1|R1|C|2789
*
9NLS|1|R1|G|2894
9NLS|1|R1|G|2895

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 13

Large ribosomal subunit protein uL13

Chain 20

Large ribosomal subunit protein bL20

Chain 22

Large ribosomal subunit protein uL22

Chain 3

50S ribosomal protein L3

Chain 32

50S ribosomal protein L32