J7_9O3K_001

3D structure

PDB id

9O3K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with macrolide erythromycin, mRNA, aminoacylated A-site Lys-tRNAlys, P-site fMAC-peptidyl-tRNAmet, and deacylated E-site tRNAlys at 2.70A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

AUGGUAAG*UACAAGC*GAACUG*CUAC*GCGCAG*CC*GU

Length

35 nucleotides

Bulged bases

9O3K|1|1A|G|530, 9O3K|1|1A|C|2021

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9O3K|1|1A|A|8
9O3K|1|1A|U|9
9O3K|1|1A|G|10
9O3K|1|1A|G|11
9O3K|1|1A|U|12
9O3K|1|1A|A|13
9O3K|1|1A|A|14
9O3K|1|1A|G|15
*
9O3K|1|1A|U|525
9O3K|1|1A|A|526
9O3K|1|1A|C|527
9O3K|1|1A|A|528
9O3K|1|1A|A|529
9O3K|1|1A|G|530
9O3K|1|1A|C|531
*
9O3K|1|1A|G|2018
9O3K|1|1A|A|2019
9O3K|1|1A|A|2020
9O3K|1|1A|C|2021
9O3K|1|1A|U|2022
9O3K|1|1A|G|2023
*
9O3K|1|1A|C|2040
9O3K|1|1A|U|2041
9O3K|1|1A|A|2042
9O3K|1|1A|C|2043
*
9O3K|1|1A|G|2625
9O3K|1|1A|C|2626
9O3K|1|1A|G|2627
9O3K|1|1A|C|2628
9O3K|1|1A|A|2629
9O3K|1|1A|G|2630
*
9O3K|1|1A|C|2788
9O3K|1|1A|C|2789
*
9O3K|1|1A|G|2894
9O3K|1|1A|U|2895

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 15

50S ribosomal protein L32

Chain 1E

50S ribosomal protein L3

Chain 1N

50S ribosomal protein L13

Chain 1U

50S ribosomal protein L20

Chain 1W

50S ribosomal protein L22