J7_9O3L_003

3D structure

PDB id

9O3L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with macrolide erythromycin, mRNA, deacylated A-site tRNAphe, P-site fMRC-peptidyl-tRNAmet, and deacylated E-site tRNAphe at 2.75A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.75 Å

Loop

Sequence

CGAAAU*AG*UGAG*CGAGCGC*GAGAC*GG*CGGUAG

Length

32 nucleotides

Bulged bases

9O3L|1|2A|A|945, 9O3L|1|2A|C|975

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9O3L|1|2A|C|817
9O3L|1|2A|G|818
9O3L|1|2A|A|819
9O3L|1|2A|A|820
9O3L|1|2A|A|821
9O3L|1|2A|U|822
*
9O3L|1|2A|A|835
9O3L|1|2A|G|836
*
9O3L|1|2A|U|943
9O3L|1|2A|G|944
9O3L|1|2A|A|945
9O3L|1|2A|G|946
*
9O3L|1|2A|C|971
9O3L|1|2A|G|972
9O3L|1|2A|A|973
9O3L|1|2A|G|974
9O3L|1|2A|C|975
9O3L|1|2A|G|975|||A
9O3L|1|2A|C|976
*
9O3L|1|2A|G|987
9O3L|1|2A|A|988
9O3L|1|2A|G|989
9O3L|1|2A|A|990
9O3L|1|2A|C|991
*
9O3L|1|2A|G|1163
9O3L|1|2A|G|1164
*
9O3L|1|2A|C|1185
9O3L|1|2A|G|1186
9O3L|1|2A|G|1187
9O3L|1|2A|U|1188
9O3L|1|2A|A|1189
9O3L|1|2A|G|1190

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 23

50S ribosomal protein L30

Chain 28

50S ribosomal protein L35

Chain 2B

5S ribosomal RNA; 5S rRNA

Chain 2P

50S ribosomal protein L15

Chain 2U

50S ribosomal protein L20

Chain 2V

50S ribosomal protein L21