J7_9PKB_001

3D structure

PDB id

9PKB (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ HHT and CHX treated human hibernating state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

CGAAGU*AG*UGGG*CGCUGC*GAACG*CC*GAGUAG

Length

31 nucleotides

Bulged bases

9PKB|1|L5|G|1854

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9PKB|1|L5|C|1666
9PKB|1|L5|G|1667
9PKB|1|L5|A|1668
9PKB|1|L5|A|1669
9PKB|1|L5|G|1670
9PKB|1|L5|U|1671
*
9PKB|1|L5|A|1684
9PKB|1|L5|G|1685
*
9PKB|1|L5|U|1852
9PKB|1|L5|G|1853
9PKB|1|L5|G|1854
9PKB|1|L5|G|1855
*
9PKB|1|L5|C|1879
9PKB|1|L5|G|1880
9PKB|1|L5|C|1881
9PKB|1|L5|U|1882
9PKB|1|L5|G|1883
9PKB|1|L5|C|1884
*
9PKB|1|L5|G|1895
9PKB|1|L5|A|1896
9PKB|1|L5|A|1897
9PKB|1|L5|C|1898
9PKB|1|L5|G|1899
*
9PKB|1|L5|C|2077
9PKB|1|L5|C|2078
*
9PKB|1|L5|G|2278
9PKB|1|L5|A|2279
9PKB|1|L5|G|2280
9PKB|1|L5|U|2281
9PKB|1|L5|A|2282
9PKB|1|L5|G|2283

Current chains

Chain L5

28S rRNA

Nearby chains

Chain L7

5S ribosomal RNA; 5S rRNA

Chain LC

60S ribosomal protein L4

Chain LF

60S ribosomal protein L7

Chain LL

Large ribosomal subunit protein eL13

Chain LQ

60S ribosomal protein L18

Chain LT

60S ribosomal protein L21

Chain La

60S ribosomal protein L27a

Chain Lb

Large ribosomal subunit protein eL29

Chain Le

60S ribosomal protein L32

Chain Lf

60S ribosomal protein L35a