J7_9PKD_001

3D structure

PDB id

9PKD (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ CHX and HHT treated 80S consensus ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.42 Å

Loop

Sequence

CGAAGU*AG*UGGG*CGCUGC*GAACG*CC*GAGUAG

Length

31 nucleotides

Bulged bases

9PKD|1|L5|G|1854

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9PKD|1|L5|C|1666
9PKD|1|L5|G|1667
9PKD|1|L5|A|1668
9PKD|1|L5|A|1669
9PKD|1|L5|G|1670
9PKD|1|L5|U|1671
*
9PKD|1|L5|A|1684
9PKD|1|L5|G|1685
*
9PKD|1|L5|U|1852
9PKD|1|L5|G|1853
9PKD|1|L5|G|1854
9PKD|1|L5|G|1855
*
9PKD|1|L5|C|1879
9PKD|1|L5|G|1880
9PKD|1|L5|C|1881
9PKD|1|L5|U|1882
9PKD|1|L5|G|1883
9PKD|1|L5|C|1884
*
9PKD|1|L5|G|1895
9PKD|1|L5|A|1896
9PKD|1|L5|A|1897
9PKD|1|L5|C|1898
9PKD|1|L5|G|1899
*
9PKD|1|L5|C|2077
9PKD|1|L5|C|2078
*
9PKD|1|L5|G|2278
9PKD|1|L5|A|2279
9PKD|1|L5|G|2280
9PKD|1|L5|U|2281
9PKD|1|L5|A|2282
9PKD|1|L5|G|2283

Current chains

Chain L5

28S rRNA

Nearby chains

Chain L7

5S ribosomal RNA; 5S rRNA

Chain LC

60S ribosomal protein L4

Chain LF

60S ribosomal protein L7

Chain LL

Large ribosomal subunit protein eL13

Chain LQ

60S ribosomal protein L18

Chain LT

60S ribosomal protein L21

Chain La

60S ribosomal protein L27a

Chain Lb

Large ribosomal subunit protein eL29

Chain Le

60S ribosomal protein L32

Chain Lf

60S ribosomal protein L35a