J7_9Q2M_001

3D structure

PDB id

9Q2M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit ribosomal 80S elongation complex with eEF2, partial P site Ala-tRNA, E site Ala-tRNA on NediV ORF

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CGAAGU*AG*UGGG*CGCUGC*GAACG*CC*GAGUAG

Length

31 nucleotides

Bulged bases

9Q2M|1|5|G|1854

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9Q2M|1|5|C|1666
9Q2M|1|5|G|1667
9Q2M|1|5|A|1668
9Q2M|1|5|A|1669
9Q2M|1|5|G|1670
9Q2M|1|5|U|1671
*
9Q2M|1|5|A|1684
9Q2M|1|5|G|1685
*
9Q2M|1|5|U|1852
9Q2M|1|5|G|1853
9Q2M|1|5|G|1854
9Q2M|1|5|G|1855
*
9Q2M|1|5|C|1879
9Q2M|1|5|G|1880
9Q2M|1|5|C|1881
9Q2M|1|5|U|1882
9Q2M|1|5|G|1883
9Q2M|1|5|C|1884
*
9Q2M|1|5|G|1895
9Q2M|1|5|A|1896
9Q2M|1|5|A|1897
9Q2M|1|5|C|1898
9Q2M|1|5|G|1899
*
9Q2M|1|5|C|2077
9Q2M|1|5|C|2078
*
9Q2M|1|5|G|2278
9Q2M|1|5|A|2279
9Q2M|1|5|G|2280
9Q2M|1|5|U|2281
9Q2M|1|5|A|2282
9Q2M|1|5|G|2283

Current chains

Chain 5

28S rRNA

Nearby chains

Chain 7

5S ribosomal RNA; 5S rRNA

Chain F

60S ribosomal protein L7

Chain L

Large ribosomal subunit protein eL13

Chain Q

Large ribosomal subunit protein eL18

Chain T

60S ribosomal protein L21

Chain a

60S ribosomal protein L27a

Chain b

eL29

Chain e

Large ribosomal subunit protein eL32

Chain f

Large ribosomal subunit protein eL33