J7_9Q2O_001
3D structure
- PDB id
- 9Q2O (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- NediV IRES in complex with Rabbit 80S ribosome with A site Ala-tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.1 Å
Loop
- Sequence
- CGAAGU*AGCUG*CUAGUGGG*CGCUGC*GAACG*CC*GAGUAG
- Length
- 38 nucleotides
- Bulged bases
- 9Q2O|1|5|G|1854, 9Q2O|1|5|A|1897
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9Q2O|1|5|C|1666
9Q2O|1|5|G|1667
9Q2O|1|5|A|1668
9Q2O|1|5|A|1669
9Q2O|1|5|G|1670
9Q2O|1|5|U|1671
*
9Q2O|1|5|A|1684
9Q2O|1|5|G|1685
9Q2O|1|5|C|1686
9Q2O|1|5|U|1687
9Q2O|1|5|G|1688
*
9Q2O|1|5|C|1848
9Q2O|1|5|U|1849
9Q2O|1|5|A|1850
9Q2O|1|5|G|1851
9Q2O|1|5|U|1852
9Q2O|1|5|G|1853
9Q2O|1|5|G|1854
9Q2O|1|5|G|1855
*
9Q2O|1|5|C|1879
9Q2O|1|5|G|1880
9Q2O|1|5|C|1881
9Q2O|1|5|U|1882
9Q2O|1|5|G|1883
9Q2O|1|5|C|1884
*
9Q2O|1|5|G|1895
9Q2O|1|5|A|1896
9Q2O|1|5|A|1897
9Q2O|1|5|C|1898
9Q2O|1|5|G|1899
*
9Q2O|1|5|C|2077
9Q2O|1|5|C|2078
*
9Q2O|1|5|G|2278
9Q2O|1|5|A|2279
9Q2O|1|5|G|2280
9Q2O|1|5|U|2281
9Q2O|1|5|A|2282
9Q2O|1|5|G|2283
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain 7
- 5S ribosomal RNA; 5S rRNA
- Chain F
- 60S ribosomal protein L7
- Chain L
- Large ribosomal subunit protein eL13
- Chain Q
- Large ribosomal subunit protein eL18
- Chain T
- 60S ribosomal protein L21
- Chain a
- 60S ribosomal protein L27a
- Chain b
- eL29
- Chain e
- Large ribosomal subunit protein eL32
- Chain f
- Large ribosomal subunit protein eL33
Coloring options: