J7_9Q6Q_002

3D structure

PDB id

9Q6Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with pleuromutilin-18 triazole derivative and protein Y at 2.90A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CGAAAU*AG*UGAG*CGAGCGC*GAGAC*GG*CGGUAG

Length

32 nucleotides

Bulged bases

9Q6Q|1|2A|A|945, 9Q6Q|1|2A|C|975

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9Q6Q|1|2A|C|817
9Q6Q|1|2A|G|818
9Q6Q|1|2A|A|819
9Q6Q|1|2A|A|820
9Q6Q|1|2A|A|821
9Q6Q|1|2A|U|822
*
9Q6Q|1|2A|A|835
9Q6Q|1|2A|G|836
*
9Q6Q|1|2A|U|943
9Q6Q|1|2A|G|944
9Q6Q|1|2A|A|945
9Q6Q|1|2A|G|946
*
9Q6Q|1|2A|C|971
9Q6Q|1|2A|G|972
9Q6Q|1|2A|A|973
9Q6Q|1|2A|G|974
9Q6Q|1|2A|C|975
9Q6Q|1|2A|G|975|||A
9Q6Q|1|2A|C|976
*
9Q6Q|1|2A|G|987
9Q6Q|1|2A|A|988
9Q6Q|1|2A|G|989
9Q6Q|1|2A|A|990
9Q6Q|1|2A|C|991
*
9Q6Q|1|2A|G|1163
9Q6Q|1|2A|G|1164
*
9Q6Q|1|2A|C|1185
9Q6Q|1|2A|G|1186
9Q6Q|1|2A|G|1187
9Q6Q|1|2A|U|1188
9Q6Q|1|2A|A|1189
9Q6Q|1|2A|G|1190

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 23

50S ribosomal protein L30

Chain 28

50S ribosomal protein L35

Chain 2B

5S ribosomal RNA; 5S rRNA

Chain 2P

50S ribosomal protein L15

Chain 2U

50S ribosomal protein L20

Chain 2V

50S ribosomal protein L21