J7_9Q6T_003

3D structure

PDB id

9Q6T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with tiamulin and protein Y at 2.65A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.65 Å

Loop

Sequence

AUGGUAAG*UACAAGC*GAACUG*CUAC*GCGCAG*CC*GU

Length

35 nucleotides

Bulged bases

9Q6T|1|2A|G|530, 9Q6T|1|2A|C|2021

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9Q6T|1|2A|A|8
9Q6T|1|2A|U|9
9Q6T|1|2A|G|10
9Q6T|1|2A|G|11
9Q6T|1|2A|U|12
9Q6T|1|2A|A|13
9Q6T|1|2A|A|14
9Q6T|1|2A|G|15
*
9Q6T|1|2A|U|525
9Q6T|1|2A|A|526
9Q6T|1|2A|C|527
9Q6T|1|2A|A|528
9Q6T|1|2A|A|529
9Q6T|1|2A|G|530
9Q6T|1|2A|C|531
*
9Q6T|1|2A|G|2018
9Q6T|1|2A|A|2019
9Q6T|1|2A|A|2020
9Q6T|1|2A|C|2021
9Q6T|1|2A|U|2022
9Q6T|1|2A|G|2023
*
9Q6T|1|2A|C|2040
9Q6T|1|2A|U|2041
9Q6T|1|2A|A|2042
9Q6T|1|2A|C|2043
*
9Q6T|1|2A|G|2625
9Q6T|1|2A|C|2626
9Q6T|1|2A|G|2627
9Q6T|1|2A|C|2628
9Q6T|1|2A|A|2629
9Q6T|1|2A|G|2630
*
9Q6T|1|2A|C|2788
9Q6T|1|2A|C|2789
*
9Q6T|1|2A|G|2894
9Q6T|1|2A|U|2895

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 25

50S ribosomal protein L32

Chain 2E

50S ribosomal protein L3

Chain 2N

50S ribosomal protein L13

Chain 2U

50S ribosomal protein L20

Chain 2W

50S ribosomal protein L22