J7_9Q87_001
3D structure
- PDB id
- 9Q87 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Principles of ion binding to RNA inferred from the analysis of a 1.55 Angstrom resolution bacterial ribosome structure - Part I: Mg2+
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.55 Å
Loop
- Sequence
- CGACUAAG*UACAAGC*GAACUC*GUAC*GCGCUG*CC*GG
- Length
- 35 nucleotides
- Bulged bases
- 9Q87|1|a|C|2025
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9Q87|1|a|C|8
9Q87|1|a|G|9
9Q87|1|a|A|10
9Q87|1|a|C|11
9Q87|1|a|U|12
9Q87|1|a|A|13
9Q87|1|a|A|14
9Q87|1|a|G|15
*
9Q87|1|a|U|525
9Q87|1|a|A|526
9Q87|1|a|C|527
9Q87|1|a|A|528
9Q87|1|a|A|529
9Q87|1|a|G|530
9Q87|1|a|C|531
*
9Q87|1|a|G|2022
9Q87|1|a|A|2023
9Q87|1|a|A|2024
9Q87|1|a|C|2025
9Q87|1|a|U|2026
9Q87|1|a|C|2027
*
9Q87|1|a|G|2044
9Q87|1|a|U|2045
9Q87|1|a|A|2046
9Q87|1|a|C|2047
*
9Q87|1|a|G|2629
9Q87|1|a|C|2630
9Q87|1|a|G|2631
9Q87|1|a|C|2632
9Q87|1|a|U|2633
9Q87|1|a|G|2634
*
9Q87|1|a|C|2792
9Q87|1|a|C|2793
*
9Q87|1|a|G|2898
9Q87|1|a|G|2899
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain d
- Large ribosomal subunit protein uL3
- Chain i
- Large ribosomal subunit protein uL13
- Chain p
- Large ribosomal subunit protein bL20
- Chain r
- Large ribosomal subunit protein uL22
- Chain z
- Large ribosomal subunit protein bL32
Coloring options: