J7_9Q87_002
3D structure
- PDB id
- 9Q87 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Principles of ion binding to RNA inferred from the analysis of a 1.55 Angstrom resolution bacterial ribosome structure - Part I: Mg2+
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.55 Å
Loop
- Sequence
- CGAAAG*CGC*GACAC*GAAGAG*CAGAC*GC*GGGUAG
- Length
- 33 nucleotides
- Bulged bases
- 9Q87|1|a|A|947
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9Q87|1|a|C|819
9Q87|1|a|G|820
9Q87|1|a|A|821
9Q87|1|a|A|822
9Q87|1|a|A|823
9Q87|1|a|G|824
*
9Q87|1|a|C|837
9Q87|1|a|G|838
9Q87|1|a|C|839
*
9Q87|1|a|G|944
9Q87|1|a|A|945
9Q87|1|a|C|946
9Q87|1|a|A|947
9Q87|1|a|C|948
*
9Q87|1|a|G|973
9Q87|1|a|A|974
9Q87|1|a|A|975
9Q87|1|a|G|976
9Q87|1|a|A|977
9Q87|1|a|G|978
*
9Q87|1|a|C|989
9Q87|1|a|A|990
9Q87|1|a|G|991
9Q87|1|a|A|992
9Q87|1|a|C|993
*
9Q87|1|a|G|1165
9Q87|1|a|C|1166
*
9Q87|1|a|G|1187
9Q87|1|a|G|1188
9Q87|1|a|G|1189
9Q87|1|a|U|1190
9Q87|1|a|A|1191
9Q87|1|a|G|1192
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain 2
- Large ribosomal subunit protein bL35
- Chain b
- 5S ribosomal RNA; 5S rRNA
- Chain k
- Large ribosomal subunit protein uL15
- Chain p
- Large ribosomal subunit protein bL20
- Chain q
- Large ribosomal subunit protein bL21
- Chain y
- Large ribosomal subunit protein uL30
Coloring options: