J7_9R9P_001
3D structure
- PDB id
- 9R9P (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 80S with nascent chain in complex with Ssb1-ADP in the S2 state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- CGAAGU*AG*UGGG*CGAUGC*GAACG*CC*GAGUAG
- Length
- 31 nucleotides
- Bulged bases
- 9R9P|1|C1|G|1116, 9R9P|1|C1|A|1159
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9R9P|1|C1|C|949
9R9P|1|C1|G|950
9R9P|1|C1|A|951
9R9P|1|C1|A|952
9R9P|1|C1|G|953
9R9P|1|C1|U|954
*
9R9P|1|C1|A|967
9R9P|1|C1|G|968
*
9R9P|1|C1|U|1114
9R9P|1|C1|G|1115
9R9P|1|C1|G|1116
9R9P|1|C1|G|1117
*
9R9P|1|C1|C|1141
9R9P|1|C1|G|1142
9R9P|1|C1|A|1143
9R9P|1|C1|U|1144
9R9P|1|C1|G|1145
9R9P|1|C1|C|1146
*
9R9P|1|C1|G|1157
9R9P|1|C1|A|1158
9R9P|1|C1|A|1159
9R9P|1|C1|C|1160
9R9P|1|C1|G|1161
*
9R9P|1|C1|C|1338
9R9P|1|C1|C|1339
*
9R9P|1|C1|G|1365
9R9P|1|C1|A|1366
9R9P|1|C1|G|1367
9R9P|1|C1|U|1368
9R9P|1|C1|A|1369
9R9P|1|C1|G|1370
Current chains
- Chain C1
- 25S ribosomal RNA
Nearby chains
- Chain C4
- 5S ribosomal RNA; 5S rRNA
- Chain LC
- 60S ribosomal protein L4-A
- Chain LF
- 60S ribosomal protein L7-A
- Chain LL
- 60S ribosomal protein L13-A
- Chain LQ
- 60S ribosomal protein L18-A
- Chain LT
- 60S ribosomal protein L21-A
- Chain La
- 60S ribosomal protein L28
- Chain Lb
- 60S ribosomal protein L29
- Chain Le
- 60S ribosomal protein L32
- Chain Lf
- 60S ribosomal protein L33-A
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