3D structure

PDB id
9RTU (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the 70S-EF-G(P610L)-GDP-Pi ribosome complex with tRNAs in hybrid state 1 (H1-EF-G(P610L)-GDP-Pi)
Experimental method
ELECTRON MICROSCOPY
Resolution
3 Å

Loop

Sequence
CGACUAAG*UACAAGC*GAACUC*GUAC*GCGCUG*CC*GG
Length
35 nucleotides
Bulged bases
9RTU|1|A|C|2021
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

9RTU|1|A|C|8
9RTU|1|A|G|9
9RTU|1|A|A|10
9RTU|1|A|C|11
9RTU|1|A|U|12
9RTU|1|A|A|13
9RTU|1|A|A|14
9RTU|1|A|G|15
*
9RTU|1|A|U|525
9RTU|1|A|A|526
9RTU|1|A|C|527
9RTU|1|A|A|528
9RTU|1|A|A|529
9RTU|1|A|G|530
9RTU|1|A|C|531
*
9RTU|1|A|G|2018
9RTU|1|A|A|2019
9RTU|1|A|A|2020
9RTU|1|A|C|2021
9RTU|1|A|U|2022
9RTU|1|A|C|2023
*
9RTU|1|A|G|2040
9RTU|1|A|U|2041
9RTU|1|A|A|2042
9RTU|1|A|C|2043
*
9RTU|1|A|G|2625
9RTU|1|A|C|2626
9RTU|1|A|G|2627
9RTU|1|A|C|2628
9RTU|1|A|U|2629
9RTU|1|A|G|2630
*
9RTU|1|A|C|2788
9RTU|1|A|C|2789
*
9RTU|1|A|G|2894
9RTU|1|A|G|2895

Current chains

Chain A
23S ribosomal RNA

Nearby chains

Chain 0
50S ribosomal protein L32
Chain D
50S ribosomal protein L3
Chain J
50S ribosomal protein L13
Chain Q
50S ribosomal protein L20
Chain R
50S ribosomal protein L21
Chain S
50S ribosomal protein L22

Coloring options:

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