J7_9SRC_001
3D structure
- PDB id
- 9SRC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA in PTC conformation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.1 Å
Loop
- Sequence
- (4AC)GAAUC*GG*UAGG*(4AC)GAGAG*CAGAC*GC*GGGUAG
- Length
- 31 nucleotides
- Bulged bases
- 9SRC|1|1|G|1199
- QA status
- Modified nucleotides: 4AC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9SRC|1|1|4AC|1068
9SRC|1|1|G|1069
9SRC|1|1|A|1070
9SRC|1|1|A|1071
9SRC|1|1|U|1072
9SRC|1|1|C|1073
*
9SRC|1|1|G|1086
9SRC|1|1|G|1087
*
9SRC|1|1|U|1197
9SRC|1|1|A|1198
9SRC|1|1|G|1199
9SRC|1|1|G|1200
*
9SRC|1|1|4AC|1222
9SRC|1|1|G|1223
9SRC|1|1|A|1224
9SRC|1|1|G|1225
9SRC|1|1|A|1226
9SRC|1|1|G|1227
*
9SRC|1|1|C|1238
9SRC|1|1|A|1239
9SRC|1|1|G|1240
9SRC|1|1|A|1241
9SRC|1|1|C|1242
*
9SRC|1|1|G|1418
9SRC|1|1|C|1419
*
9SRC|1|1|G|1444
9SRC|1|1|G|1445
9SRC|1|1|G|1446
9SRC|1|1|U|1447
9SRC|1|1|A|1448
9SRC|1|1|G|1449
Current chains
- Chain 1
- rRNA 23S
Nearby chains
- Chain 3
- 5S ribosomal RNA; 5S rRNA
- Chain BL
- Large ribosomal subunit protein uL15
- Chain BR
- Large ribosomal subunit protein eL21
- Chain BY
- Large ribosomal subunit protein uL30
- Chain Bb
- Large ribosomal subunit protein eL32
- Chain Bc
- Large ribosomal subunit protein eL33
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